J4_6GZZ_015

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAGUAACGCGUGG*CCGCGUCC*GGUAGC*GCC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|108
6GZZ|1|A4|A|109
6GZZ|1|A4|G|110
6GZZ|1|A4|U|111
6GZZ|1|A4|A|112
6GZZ|1|A4|A|113
6GZZ|1|A4|C|114
6GZZ|1|A4|G|115
6GZZ|1|A4|C|116
6GZZ|1|A4|G|117
6GZZ|1|A4|U|118
6GZZ|1|A4|G|119
6GZZ|1|A4|G|120
*
6GZZ|1|A4|C|229
6GZZ|1|A4|C|230
6GZZ|1|A4|G|231
6GZZ|1|A4|C|232
6GZZ|1|A4|G|233
6GZZ|1|A4|U|234
6GZZ|1|A4|C|235
6GZZ|1|A4|C|236
*
6GZZ|1|A4|G|280
6GZZ|1|A4|G|281
6GZZ|1|A4|U|282
6GZZ|1|A4|A|283
6GZZ|1|A4|G|284
6GZZ|1|A4|C|285
*
6GZZ|1|A4|G|305
6GZZ|1|A4|C|306
6GZZ|1|A4|C|307

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain L4

30S ribosomal protein S12

Chain P4

30S ribosomal protein S16

Chain Q4

30S ribosomal protein S17