J4_6GZZ_016

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGG*CGAAAGC*GCCCUAAACGAUGCG*CGCC

Length

29 nucleotides

Bulged bases

6GZZ|1|A4|G|559, 6GZZ|1|A4|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|558
6GZZ|1|A4|G|559
6GZZ|1|A4|G|560
*
6GZZ|1|A4|C|747
6GZZ|1|A4|G|748
6GZZ|1|A4|A|749
6GZZ|1|A4|A|750
6GZZ|1|A4|A|751
6GZZ|1|A4|G|752
6GZZ|1|A4|C|753
*
6GZZ|1|A4|G|792
6GZZ|1|A4|C|793
6GZZ|1|A4|C|794
6GZZ|1|A4|C|795
6GZZ|1|A4|U|796
6GZZ|1|A4|A|797
6GZZ|1|A4|A|798
6GZZ|1|A4|A|799
6GZZ|1|A4|C|800
6GZZ|1|A4|G|801
6GZZ|1|A4|A|802
6GZZ|1|A4|U|803
6GZZ|1|A4|G|804
6GZZ|1|A4|C|805
6GZZ|1|A4|G|806
*
6GZZ|1|A4|C|854
6GZZ|1|A4|G|855
6GZZ|1|A4|C|856
6GZZ|1|A4|C|857

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain H4

30S ribosomal protein S8

Chain L4

30S ribosomal protein S12

Chain O4

30S ribosomal protein S15

Chain Q4

30S ribosomal protein S17