J4_6GZZ_017

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGGUGGAGC*GCUACAAUG*CCCAGUUCGGAUUGG*CCAUGAAGCCGGAAUCGC

Length

52 nucleotides

Bulged bases

6GZZ|1|A4|U|1221, 6GZZ|1|A4|C|1278, 6GZZ|1|A4|U|1283, 6GZZ|1|A4|C|1317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|916
6GZZ|1|A4|C|917
6GZZ|1|A4|G|918
6GZZ|1|A4|G|919
6GZZ|1|A4|U|920
6GZZ|1|A4|G|921
6GZZ|1|A4|G|922
6GZZ|1|A4|A|923
6GZZ|1|A4|G|924
6GZZ|1|A4|C|925
*
6GZZ|1|A4|G|1214
6GZZ|1|A4|C|1215
6GZZ|1|A4|U|1216
6GZZ|1|A4|A|1217
6GZZ|1|A4|C|1218
6GZZ|1|A4|A|1219
6GZZ|1|A4|A|1220
6GZZ|1|A4|U|1221
6GZZ|1|A4|G|1222
*
6GZZ|1|A4|C|1277
6GZZ|1|A4|C|1278
6GZZ|1|A4|C|1279
6GZZ|1|A4|A|1280
6GZZ|1|A4|G|1281
6GZZ|1|A4|U|1282
6GZZ|1|A4|U|1283
6GZZ|1|A4|C|1284
6GZZ|1|A4|G|1285
6GZZ|1|A4|G|1286
6GZZ|1|A4|A|1287
6GZZ|1|A4|U|1288
6GZZ|1|A4|U|1289
6GZZ|1|A4|G|1290
6GZZ|1|A4|G|1291
*
6GZZ|1|A4|C|1308
6GZZ|1|A4|C|1309
6GZZ|1|A4|A|1310
6GZZ|1|A4|U|1311
6GZZ|1|A4|G|1312
6GZZ|1|A4|A|1313
6GZZ|1|A4|A|1314
6GZZ|1|A4|G|1315
6GZZ|1|A4|C|1316
6GZZ|1|A4|C|1317
6GZZ|1|A4|G|1318
6GZZ|1|A4|G|1319
6GZZ|1|A4|A|1320
6GZZ|1|A4|A|1321
6GZZ|1|A4|U|1322
6GZZ|1|A4|C|1323
6GZZ|1|A4|G|1324
6GZZ|1|A4|C|1325

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain G4

30S ribosomal protein S7

Chain I4

30S ribosomal protein S9

Chain M4

30S ribosomal protein S13

Chain S4

30S ribosomal protein S19

Chain U4

30S ribosomal protein Thx

Chain V4

Ribosome hibernation promoting factor

Chain Z2

50S ribosomal protein L31