Loop J4_6GZZ

3D structure

PDB id: 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: T. thermophilus hibernating 100S ribosome (amc)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å

Loop

Sequence: UUG*CGGCC*GGUCCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAAA
Length: 45 nucleotides
Bulged bases: 6GZZ|1|A1|A|1962, 6GZZ|1|A1|U|1968, 6GZZ|1|A1|U|1987, 6GZZ|1|A1|A|1995
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GZZ|1|A1|U|1866
6GZZ|1|A1|U|1867
6GZZ|1|A1|G|1868
*
6GZZ|1|A1|C|1929
6GZZ|1|A1|G|1930
6GZZ|1|A1|G|1931
6GZZ|1|A1|C|1932
6GZZ|1|A1|C|1933
*
6GZZ|1|A1|G|1945
6GZZ|1|A1|G|1946
6GZZ|1|A1|U|1947
6GZZ|1|A1|C|1948
6GZZ|1|A1|C|1949
6GZZ|1|A1|U|1950
6GZZ|1|A1|A|1951
6GZZ|1|A1|A|1952
6GZZ|1|A1|G|1953
6GZZ|1|A1|G|1954
6GZZ|1|A1|U|1955
6GZZ|1|A1|A|1956
6GZZ|1|A1|G|1957
6GZZ|1|A1|C|1958
6GZZ|1|A1|G|1959
6GZZ|1|A1|A|1960
6GZZ|1|A1|A|1961
6GZZ|1|A1|A|1962
6GZZ|1|A1|U|1963
6GZZ|1|A1|U|1964
6GZZ|1|A1|C|1965
6GZZ|1|A1|C|1966
6GZZ|1|A1|U|1967
6GZZ|1|A1|U|1968
6GZZ|1|A1|G|1969
*
6GZZ|1|A1|C|1985
6GZZ|1|A1|C|1986
6GZZ|1|A1|U|1987
6GZZ|1|A1|G|1988
6GZZ|1|A1|C|1989
6GZZ|1|A1|A|1990
6GZZ|1|A1|C|1991
6GZZ|1|A1|G|1992
6GZZ|1|A1|A|1993
6GZZ|1|A1|A|1994
6GZZ|1|A1|A|1995
6GZZ|1|A1|A|1996

Current chains

Chain A1: 23S ribosomal RNA

Nearby chains

Chain A3: Small subunit ribosomal RNA; SSU rRNA
Chain C1: 50S ribosomal protein L2

J4_6GZZ_020