J4_6H4N_001

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6H4N|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H4N_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1103

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6H4N|1|A|C|268
6H4N|1|A|C|269
*
6H4N|1|A|G|370
6H4N|1|A|A|371
6H4N|1|A|G|372
6H4N|1|A|U|373
6H4N|1|A|A|374
6H4N|1|A|G|375
*
6H4N|1|A|U|399
6H4N|1|A|G|400
6H4N|1|A|A|401
6H4N|1|A|A|402
6H4N|1|A|U|403
6H4N|1|A|A|404
6H4N|1|A|U|405
6H4N|1|A|G|406
*
6H4N|1|A|C|421
6H4N|1|A|A|422
6H4N|1|A|A|423
6H4N|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28