J4_6H4N_005

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6H4N|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H4N_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0739

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6H4N|1|A|U|1313
6H4N|1|A|C|1314
*
6H4N|1|A|G|1338
6H4N|1|A|G|1339
6H4N|1|A|U|1340
6H4N|1|A|G|1341
6H4N|1|A|A|1342
6H4N|1|A|G|1343
*
6H4N|1|A|C|1404
6H4N|1|A|U|1405
*
6H4N|1|A|A|1597
6H4N|1|A|A|1598
6H4N|1|A|U|1599
6H4N|1|A|C|1600
6H4N|1|A|G|1601
6H4N|1|A|U|1602
6H4N|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23