3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6H4N_010 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0797
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6H4N|1|A|G|2643
6H4N|1|A|G|2644
6H4N|1|A|G|2645
6H4N|1|A|C|2646
*
6H4N|1|A|G|2674
6H4N|1|A|A|2675
6H4N|1|A|C|2676
*
6H4N|1|A|G|2731
6H4N|1|A|G|2732
6H4N|1|A|A|2733
6H4N|1|A|A|2734
6H4N|1|A|G|2735
*
6H4N|1|A|U|2769
6H4N|1|A|G|2770
6H4N|1|A|C|2771

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain K
50S ribosomal protein L14

Coloring options:


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