J4_6H58_018

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6H58|1|AA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H58_018 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0926

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6H58|1|AA|C|1833
6H58|1|AA|U|1834
6H58|1|AA|G|1835
*
6H58|1|AA|C|1905
6H58|1|AA|G|1906
*
6H58|1|AA|C|1924
6H58|1|AA|C|1925
6H58|1|AA|U|1926
6H58|1|AA|A|1927
6H58|1|AA|A|1928
6H58|1|AA|G|1929
6H58|1|AA|G|1930
6H58|1|AA|U|1931
6H58|1|AA|A|1932
6H58|1|AA|G|1933
*
6H58|1|AA|C|1967
6H58|1|AA|G|1968
6H58|1|AA|A|1969
6H58|1|AA|A|1970
6H58|1|AA|U|1971
6H58|1|AA|G|1972

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain aa

Small subunit ribosomal RNA; SSU rRNA