J4_6HA1_002

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1346

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|U|340
6HA1|1|A|G|341
6HA1|1|A|A|342
6HA1|1|A|A|343
6HA1|1|A|G|344
*
6HA1|1|A|C|360
6HA1|1|A|G|361
6HA1|1|A|C|362
6HA1|1|A|C|363
*
6HA1|1|A|G|367
6HA1|1|A|G|368
6HA1|1|A|A|369
*
6HA1|1|A|U|381
6HA1|1|A|G|382
6HA1|1|A|U|383
6HA1|1|A|A|384
6HA1|1|A|G|385

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24