J4_6HA1_004

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

6HA1|1|A|G|1311, 6HA1|1|A|A|1312, 6HA1|1|A|A|1314, 6HA1|1|A|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.125

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6HA1|1|A|C|1310
6HA1|1|A|G|1311
6HA1|1|A|A|1312
6HA1|1|A|A|1313
6HA1|1|A|A|1314
6HA1|1|A|G|1315
*
6HA1|1|A|C|1333
6HA1|1|A|C|1334
*
6HA1|1|A|G|1690
6HA1|1|A|A|1691
6HA1|1|A|U|1692
6HA1|1|A|C|1693
*
6HA1|1|A|G|2038
6HA1|1|A|G|2039

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22