J4_6HA1_008

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_008 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0678

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HA1|1|A|G|1801
6HA1|1|A|A|1802
6HA1|1|A|C|1803
6HA1|1|A|U|1804
6HA1|1|A|G|1805
*
6HA1|1|A|C|1817
6HA1|1|A|A|1818
6HA1|1|A|C|1819
6HA1|1|A|A|1820
6HA1|1|A|G|1821
*
6HA1|1|A|U|1856
6HA1|1|A|G|1857
6HA1|1|A|A|1858
6HA1|1|A|C|1859
*
6HA1|1|A|G|2004
6HA1|1|A|C|2005
6HA1|1|A|A|2006
6HA1|1|A|A|2007
6HA1|1|A|C|2008

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2