J4_6HA1_009

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6HA1|1|A|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.084

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|C|1862
6HA1|1|A|U|1863
6HA1|1|A|G|1864
*
6HA1|1|A|C|1934
6HA1|1|A|G|1935
*
6HA1|1|A|C|1953
6HA1|1|A|C|1954
6HA1|1|A|U|1955
6HA1|1|A|A|1956
6HA1|1|A|A|1957
6HA1|1|A|G|1958
6HA1|1|A|G|1959
6HA1|1|A|U|1960
6HA1|1|A|A|1961
6HA1|1|A|G|1962
*
6HA1|1|A|C|1996
6HA1|1|A|G|1997
6HA1|1|A|A|1998
6HA1|1|A|A|1999
6HA1|1|A|A|2000
6HA1|1|A|G|2001

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Transfer RNA; tRNA