J4_6HA1_012

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|a|G|113
6HA1|1|a|A|114
6HA1|1|a|G|115
6HA1|1|a|U|116
6HA1|1|a|A|117
6HA1|1|a|A|118
6HA1|1|a|C|119
6HA1|1|a|A|120
6HA1|1|a|C|121
*
6HA1|1|a|G|246
6HA1|1|a|G|247
6HA1|1|a|C|248
*
6HA1|1|a|G|294
6HA1|1|a|U|295
6HA1|1|a|A|296
6HA1|1|a|G|297
*
6HA1|1|a|C|319
6HA1|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17