J4_6HA1_013

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GAUGGUU*AUAAAAG*CAC

Length

20 nucleotides

Bulged bases

6HA1|1|a|G|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|a|G|141
6HA1|1|a|A|142
6HA1|1|a|C|143
*
6HA1|1|a|G|177
6HA1|1|a|A|178
6HA1|1|a|U|179
6HA1|1|a|G|180
6HA1|1|a|G|181
6HA1|1|a|U|182
6HA1|1|a|U|183
*
6HA1|1|a|A|206
6HA1|1|a|U|207
6HA1|1|a|A|208
6HA1|1|a|A|209
6HA1|1|a|A|210
6HA1|1|a|A|211
6HA1|1|a|G|212
*
6HA1|1|a|C|227
6HA1|1|a|A|228
6HA1|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20