J4_6HCF_002
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGGUC
- Length
- 38 nucleotides
- Bulged bases
- 6HCF|1|52|G|959, 6HCF|1|52|C|972, 6HCF|1|52|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|710
6HCF|1|52|A|711
6HCF|1|52|C|712
6HCF|1|52|C|713
*
6HCF|1|52|G|955
6HCF|1|52|A|956
6HCF|1|52|G|957
6HCF|1|52|G|958
6HCF|1|52|G|959
6HCF|1|52|A|960
6HCF|1|52|G|961
*
6HCF|1|52|U|971
6HCF|1|52|G|971|||A
6HCF|1|52|C|972
6HCF|1|52|G|973
6HCF|1|52|C|974
6HCF|1|52|C|975
6HCF|1|52|G|976
6HCF|1|52|C|977
6HCF|1|52|G|978
6HCF|1|52|C|979
6HCF|1|52|U|980
6HCF|1|52|C|981
6HCF|1|52|U|982
*
6HCF|1|52|G|1273
6HCF|1|52|A|1274
6HCF|1|52|G|1275
6HCF|1|52|C|1276
6HCF|1|52|G|1277
6HCF|1|52|C|1278
6HCF|1|52|A|1279
6HCF|1|52|C|1280
6HCF|1|52|G|1281
6HCF|1|52|G|1282
6HCF|1|52|G|1283
6HCF|1|52|G|1284
6HCF|1|52|U|1285
6HCF|1|52|C|1286
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain E3
- 60S ribosomal protein L6
- Chain F3
- uL30
- Chain b3
- eL29
- Chain e3
- eL32
- Chain f3
- eL33
Coloring options: