J4_6HCF_003
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCC*GGAC*GUGG*CCACAGCCAAGGGAACG
- Length
- 28 nucleotides
- Bulged bases
- 6HCF|1|52|A|3876, 6HCF|1|52|A|3877, 6HCF|1|52|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|C|1313
6HCF|1|52|C|1314
6HCF|1|52|C|1315
*
6HCF|1|52|G|1328
6HCF|1|52|G|1329
6HCF|1|52|A|1330
6HCF|1|52|C|1331
*
6HCF|1|52|G|2355
6HCF|1|52|U|2356
6HCF|1|52|G|2357
6HCF|1|52|G|2358
*
6HCF|1|52|C|3863
6HCF|1|52|C|3864
6HCF|1|52|A|3865
6HCF|1|52|C|3866
6HCF|1|52|A|3867
6HCF|1|52|G|3868
6HCF|1|52|C|3869
6HCF|1|52|C|3870
6HCF|1|52|A|3871
6HCF|1|52|A|3872
6HCF|1|52|G|3873
6HCF|1|52|G|3874
6HCF|1|52|G|3875
6HCF|1|52|A|3876
6HCF|1|52|A|3877
6HCF|1|52|C|3878
6HCF|1|52|G|3879
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain B3
- uL3
- Chain C3
- uL4
- Chain O3
- uL13
- Chain P3
- uL22
- Chain e3
- eL32
Coloring options: