J4_6HCF_005

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGUC*GGAGUC*GAAUC*GGCCG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|2441
6HCF|1|52|G|2442
6HCF|1|52|G|2443
6HCF|1|52|U|2444
6HCF|1|52|C|2445
*
6HCF|1|52|G|2515
6HCF|1|52|G|2516
6HCF|1|52|A|2517
6HCF|1|52|G|2518
6HCF|1|52|U|2519
6HCF|1|52|C|2520
*
6HCF|1|52|G|2535
6HCF|1|52|A|2536
6HCF|1|52|A|2537
6HCF|1|52|U|2538
6HCF|1|52|C|2539
*
6HCF|1|52|G|2777
6HCF|1|52|G|2778
6HCF|1|52|C|2779
6HCF|1|52|C|2780
6HCF|1|52|G|2781

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain X3

uL23

Chain g3

eL34

Chain k3

eL38

Chain l3

eL39