Loop J4_6HCF

3D structure

PDB id: 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GCGGAGAUG*CAGUG*CGACCGAUCC*GGGGAGAGGGUGUAAAUCUCGC
Length: 46 nucleotides
Bulged bases: 6HCF|1|52|U|2575, 6HCF|1|52|U|2761, 6HCF|1|52|U|2763, 6HCF|1|52|C|2768, 6HCF|1|52|U|2769
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCF|1|52|G|2547
6HCF|1|52|C|2548
6HCF|1|52|G|2549
6HCF|1|52|G|2550
6HCF|1|52|A|2551
6HCF|1|52|G|2552
6HCF|1|52|A|2553
6HCF|1|52|U|2554
6HCF|1|52|G|2555
*
6HCF|1|52|C|2572
6HCF|1|52|A|2573
6HCF|1|52|G|2574
6HCF|1|52|U|2575
6HCF|1|52|G|2576
*
6HCF|1|52|C|2585
6HCF|1|52|G|2586
6HCF|1|52|A|2587
6HCF|1|52|C|2588
6HCF|1|52|C|2589
6HCF|1|52|G|2590
6HCF|1|52|A|2591
6HCF|1|52|U|2592
6HCF|1|52|C|2593
6HCF|1|52|C|2594
*
6HCF|1|52|G|2751
6HCF|1|52|G|2752
6HCF|1|52|G|2753
6HCF|1|52|G|2754
6HCF|1|52|A|2755
6HCF|1|52|G|2756
6HCF|1|52|A|2757
6HCF|1|52|G|2758
6HCF|1|52|G|2759
6HCF|1|52|G|2760
6HCF|1|52|U|2761
6HCF|1|52|G|2762
6HCF|1|52|U|2763
6HCF|1|52|A|2764
6HCF|1|52|A|2765
6HCF|1|52|A|2766
6HCF|1|52|U|2767
6HCF|1|52|C|2768
6HCF|1|52|U|2769
6HCF|1|52|C|2770
6HCF|1|52|G|2771
6HCF|1|52|C|2772

Current chains

Chain 52: 28S ribosomal RNA

Nearby chains

Chain A3: Ribosomal protein L8
Chain Z3: 60S ribosomal protein L27
Chain g3: eL34
Chain k3: eL38

J4_6HCF_006