J4_6HCF_020

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCGGG*UGUGAA*UGGAAAG*UCCGGUGAG

Length

29 nucleotides

Bulged bases

6HCF|1|52|A|2696, 6HCF|1|52|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|2613
6HCF|1|52|C|2614
6HCF|1|52|C|2615
6HCF|1|52|C|2616
6HCF|1|52|G|2617
6HCF|1|52|G|2618
6HCF|1|52|G|2619
*
6HCF|1|52|U|2637
6HCF|1|52|G|2638
6HCF|1|52|U|2639
6HCF|1|52|G|2640
6HCF|1|52|A|2641
6HCF|1|52|A|2642
*
6HCF|1|52|U|2692
6HCF|1|52|G|2693
6HCF|1|52|G|2694
6HCF|1|52|A|2695
6HCF|1|52|A|2696
6HCF|1|52|A|2697
6HCF|1|52|G|2698
*
6HCF|1|52|U|2718
6HCF|1|52|C|2719
6HCF|1|52|C|2720
6HCF|1|52|G|2721
6HCF|1|52|G|2722
6HCF|1|52|U|2723
6HCF|1|52|G|2724
6HCF|1|52|A|2725
6HCF|1|52|G|2726

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain g3

eL34

Chain k3

eL38