J4_6HCF_021
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAGUCGGCAAGCCGG*UGGCU*AACUGGUGCGGACCAGG*CACUGUC
- Length
- 46 nucleotides
- Bulged bases
- 6HCF|1|52|G|3615, 6HCF|1|52|G|3620, 6HCF|1|52|G|3625, 6HCF|1|52|G|3839, 6HCF|1|52|U|3840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|2847
6HCF|1|52|G|2848
6HCF|1|52|A|2849
6HCF|1|52|A|2850
6HCF|1|52|G|2851
6HCF|1|52|U|2852
6HCF|1|52|C|2853
6HCF|1|52|G|2854
6HCF|1|52|G|2855
6HCF|1|52|C|2856
6HCF|1|52|A|2857
6HCF|1|52|A|2858
6HCF|1|52|G|2859
6HCF|1|52|C|2860
6HCF|1|52|C|2861
6HCF|1|52|G|2862
6HCF|1|52|G|2863
*
6HCF|1|52|U|2887
6HCF|1|52|G|2888
6HCF|1|52|G|2889
6HCF|1|52|C|2890
6HCF|1|52|U|2891
*
6HCF|1|52|A|3610
6HCF|1|52|A|3611
6HCF|1|52|C|3612
6HCF|1|52|U|3613
6HCF|1|52|G|3614
6HCF|1|52|G|3615
6HCF|1|52|U|3616
6HCF|1|52|G|3617
6HCF|1|52|C|3618
6HCF|1|52|G|3619
6HCF|1|52|G|3620
6HCF|1|52|A|3621
6HCF|1|52|C|3622
6HCF|1|52|C|3623
6HCF|1|52|A|3624
6HCF|1|52|G|3625
6HCF|1|52|G|3626
*
6HCF|1|52|C|3835
6HCF|1|52|A|3836
6HCF|1|52|C|3837
6HCF|1|52|U|3838
6HCF|1|52|G|3839
6HCF|1|52|U|3840
6HCF|1|52|C|3841
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain B3
- uL3
- Chain J1
- eS8
- Chain R3
- eL19
- Chain V3
- Ribosomal protein L23
- Chain W3
- eL24
Coloring options: