J4_6HCF_022

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUG*CAAAGC*GUGAUU*AUGAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|3634
6HCF|1|52|A|3635
6HCF|1|52|C|3636
6HCF|1|52|U|3637
6HCF|1|52|G|3638
*
6HCF|1|52|C|3650
6HCF|1|52|A|3651
6HCF|1|52|A|3652
6HCF|1|52|A|3653
6HCF|1|52|G|3654
6HCF|1|52|C|3655
*
6HCF|1|52|G|3689
6HCF|1|52|U|3690
6HCF|1|52|G|3691
6HCF|1|52|A|3692
6HCF|1|52|U|3693
6HCF|1|52|U|3694
*
6HCF|1|52|A|3821
6HCF|1|52|U|3822
6HCF|1|52|G|3823
6HCF|1|52|A|3824
6HCF|1|52|A|3825
6HCF|1|52|C|3826

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain n3

eL41

Chain p3

eL43