Loop J4_6HCF

3D structure

PDB id: 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: CUGCCCAG*CGGCG*CUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUG
Length: 47 nucleotides
Bulged bases: 6HCF|1|52|C|3701, 6HCF|1|52|A|3785, 6HCF|1|52|C|3791, 6HCF|1|52|C|3810, 6HCF|1|52|U|3818
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCF|1|52|C|3696
6HCF|1|52|U|3697
6HCF|1|52|G|3698
6HCF|1|52|C|3699
6HCF|1|52|C|3700
6HCF|1|52|C|3701
6HCF|1|52|A|3702
6HCF|1|52|G|3703
*
6HCF|1|52|C|3749
6HCF|1|52|G|3750
6HCF|1|52|G|3751
6HCF|1|52|C|3752
6HCF|1|52|G|3753
*
6HCF|1|52|C|3771
6HCF|1|52|U|3772
6HCF|1|52|U|3773
6HCF|1|52|A|3774
6HCF|1|52|A|3775
6HCF|1|52|G|3776
6HCF|1|52|G|3777
6HCF|1|52|U|3778
6HCF|1|52|A|3779
6HCF|1|52|G|3780
6HCF|1|52|C|3781
6HCF|1|52|C|3782
6HCF|1|52|A|3783
6HCF|1|52|A|3784
6HCF|1|52|A|3785
6HCF|1|52|U|3786
6HCF|1|52|G|3787
6HCF|1|52|C|3788
6HCF|1|52|C|3789
6HCF|1|52|U|3790
6HCF|1|52|C|3791
6HCF|1|52|G|3792
*
6HCF|1|52|C|3808
6HCF|1|52|G|3809
6HCF|1|52|C|3810
6HCF|1|52|G|3811
6HCF|1|52|C|3812
6HCF|1|52|A|3813
6HCF|1|52|U|3814
6HCF|1|52|G|3815
6HCF|1|52|A|3816
6HCF|1|52|A|3817
6HCF|1|52|U|3818
6HCF|1|52|G|3819

Current chains

Chain 52: 28S ribosomal RNA

Nearby chains

Chain 23: Transfer RNA; tRNA
Chain A1: Small subunit ribosomal RNA; SSU rRNA
Chain A3: Ribosomal protein L8
Chain j1: eRF1(AAQ)
Chain n3: eL41

J4_6HCF_023