J4_6HCF_024

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAGGC*GCUUG*CC*GGG

Length

17 nucleotides

Bulged bases

6HCF|1|52|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|4231
6HCF|1|52|U|4232
6HCF|1|52|A|4233
6HCF|1|52|A|4234
6HCF|1|52|G|4235
6HCF|1|52|G|4236
6HCF|1|52|C|4237
*
6HCF|1|52|G|4287
6HCF|1|52|C|4288
6HCF|1|52|U|4289
6HCF|1|52|U|4290
6HCF|1|52|G|4291
*
6HCF|1|52|C|4318
6HCF|1|52|C|4319
*
6HCF|1|52|G|4328
6HCF|1|52|G|4329
6HCF|1|52|G|4330

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain T3

eL21

Chain o3

eL42