J4_6HCJ_001

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGG*UGC*GAGGUCG*CC

Length

16 nucleotides

Bulged bases

6HCJ|1|33|U|8, 6HCJ|1|33|U|46, 6HCJ|1|33|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HCJ_001 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.1729

The information below is about J4_8VU0_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

6HCJ|1|33|G|7
6HCJ|1|33|U|8
6HCJ|1|33|G|9
6HCJ|1|33|G|10
*
6HCJ|1|33|U|24
6HCJ|1|33|G|25
6HCJ|1|33|C|26
*
6HCJ|1|33|G|42
6HCJ|1|33|A|43
6HCJ|1|33|G|44
6HCJ|1|33|G|45
6HCJ|1|33|U|46
6HCJ|1|33|C|47
6HCJ|1|33|G|48
*
6HCJ|1|33|C|64
6HCJ|1|33|C|65

Current chains

Chain 33

P/E tRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain o3

eL42