J4_6HCJ_002
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAGCG*CGUACGG*CCCGGAGUCGGGUU*AGCCCAAAGCGGGUGGUAAACUCCAUCUAAG
- Length
- 58 nucleotides
- Bulged bases
- 6HCJ|1|51|C|159, 6HCJ|1|51|A|279, 6HCJ|1|51|C|309, 6HCJ|1|51|G|315, 6HCJ|1|51|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|111
6HCJ|1|51|C|112
6HCJ|1|51|A|113
6HCJ|1|51|G|114
6HCJ|1|51|C|115
6HCJ|1|51|G|116
*
6HCJ|1|51|C|155
6HCJ|1|51|G|156
6HCJ|1|51|U|157
6HCJ|1|51|A|158
6HCJ|1|51|C|159
6HCJ|1|51|G|160
6HCJ|1|51|G|161
*
6HCJ|1|51|C|274
6HCJ|1|51|C|275
6HCJ|1|51|C|276
6HCJ|1|51|G|277
6HCJ|1|51|G|278
6HCJ|1|51|A|279
6HCJ|1|51|G|280
6HCJ|1|51|U|281
6HCJ|1|51|C|282
6HCJ|1|51|G|283
6HCJ|1|51|G|284
6HCJ|1|51|G|285
6HCJ|1|51|U|286
6HCJ|1|51|U|287
*
6HCJ|1|51|A|300
6HCJ|1|51|G|301
6HCJ|1|51|C|302
6HCJ|1|51|C|303
6HCJ|1|51|C|304
6HCJ|1|51|A|305
6HCJ|1|51|A|306
6HCJ|1|51|A|307
6HCJ|1|51|G|308
6HCJ|1|51|C|309
6HCJ|1|51|G|310
6HCJ|1|51|G|311
6HCJ|1|51|G|312
6HCJ|1|51|U|313
6HCJ|1|51|G|314
6HCJ|1|51|G|315
6HCJ|1|51|U|316
6HCJ|1|51|A|317
6HCJ|1|51|A|318
6HCJ|1|51|A|319
6HCJ|1|51|C|320
6HCJ|1|51|U|321
6HCJ|1|51|C|322
6HCJ|1|51|C|323
6HCJ|1|51|A|324
6HCJ|1|51|U|325
6HCJ|1|51|C|326
6HCJ|1|51|U|327
6HCJ|1|51|A|328
6HCJ|1|51|A|329
6HCJ|1|51|G|330
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain G3
- eL8
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain o3
- eL42
Coloring options: