J4_6HCJ_004

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAUAUUC*GAAGGC*GCAUGUUG*CAG

Length

26 nucleotides

Bulged bases

6HCJ|1|51|A|2366, 6HCJ|1|51|U|2369, 6HCJ|1|51|A|2370, 6HCJ|1|51|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|2365
6HCJ|1|51|A|2366
6HCJ|1|51|A|2367
6HCJ|1|51|A|2368
6HCJ|1|51|U|2369
6HCJ|1|51|A|2370
6HCJ|1|51|U|2371
6HCJ|1|51|U|2372
6HCJ|1|51|C|2373
*
6HCJ|1|51|G|2387
6HCJ|1|51|A|2388
6HCJ|1|51|A|2389
6HCJ|1|51|G|2390
6HCJ|1|51|G|2391
6HCJ|1|51|C|2392
*
6HCJ|1|51|G|2823
6HCJ|1|51|C|2824
6HCJ|1|51|A|2825
6HCJ|1|51|U|2826
6HCJ|1|51|G|2827
6HCJ|1|51|U|2828
6HCJ|1|51|U|2829
6HCJ|1|51|G|2830
*
6HCJ|1|51|C|3855
6HCJ|1|51|A|3856
6HCJ|1|51|G|3857

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31