J4_6HCJ_005

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGUGGAGAAG*CCAUAUC*GUCUCCAAGGU*GCCUCUG

Length

38 nucleotides

Bulged bases

6HCJ|1|51|A|2396, 6HCJ|1|51|U|2398, 6HCJ|1|51|U|2788, 6HCJ|1|51|A|2789, 6HCJ|1|51|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|2393
6HCJ|1|51|G|2394
6HCJ|1|51|A|2395
6HCJ|1|51|A|2396
6HCJ|1|51|G|2397
6HCJ|1|51|U|2398
6HCJ|1|51|G|2399
6HCJ|1|51|G|2400
6HCJ|1|51|A|2401
6HCJ|1|51|G|2402
6HCJ|1|51|A|2403
6HCJ|1|51|A|2404
6HCJ|1|51|G|2405
*
6HCJ|1|51|C|2785
6HCJ|1|51|C|2786
6HCJ|1|51|A|2787
6HCJ|1|51|U|2788
6HCJ|1|51|A|2789
6HCJ|1|51|U|2790
6HCJ|1|51|C|2791
*
6HCJ|1|51|G|2800
6HCJ|1|51|U|2801
6HCJ|1|51|C|2802
6HCJ|1|51|U|2803
6HCJ|1|51|C|2804
6HCJ|1|51|C|2805
6HCJ|1|51|A|2806
6HCJ|1|51|A|2807
6HCJ|1|51|G|2808
6HCJ|1|51|G|2809
6HCJ|1|51|U|2810
*
6HCJ|1|51|G|2816
6HCJ|1|51|C|2817
6HCJ|1|51|C|2818
6HCJ|1|51|U|2819
6HCJ|1|51|C|2820
6HCJ|1|51|U|2821
6HCJ|1|51|G|2822

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain l3

eL39