3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGG*UUGUGAAGGGCAG*CGUGCCUUGGAAAGCGUCG*CGGCGUC
Length
42 nucleotides
Bulged bases
6HCJ|1|51|U|2687, 6HCJ|1|51|A|2696
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|G|2618
6HCJ|1|51|G|2619
6HCJ|1|51|G|2620
*
6HCJ|1|51|U|2636
6HCJ|1|51|U|2637
6HCJ|1|51|G|2638
6HCJ|1|51|U|2639
6HCJ|1|51|G|2640
6HCJ|1|51|A|2641
6HCJ|1|51|A|2642
6HCJ|1|51|G|2643
6HCJ|1|51|G|2644
6HCJ|1|51|G|2645
6HCJ|1|51|C|2646
6HCJ|1|51|A|2647
6HCJ|1|51|G|2648
*
6HCJ|1|51|C|2685
6HCJ|1|51|G|2686
6HCJ|1|51|U|2687
6HCJ|1|51|G|2688
6HCJ|1|51|C|2689
6HCJ|1|51|C|2690
6HCJ|1|51|U|2691
6HCJ|1|51|U|2692
6HCJ|1|51|G|2693
6HCJ|1|51|G|2694
6HCJ|1|51|A|2695
6HCJ|1|51|A|2696
6HCJ|1|51|A|2697
6HCJ|1|51|G|2698
6HCJ|1|51|C|2699
6HCJ|1|51|G|2700
6HCJ|1|51|U|2701
6HCJ|1|51|C|2702
6HCJ|1|51|G|2703
*
6HCJ|1|51|C|2713
6HCJ|1|51|G|2714
6HCJ|1|51|G|2715
6HCJ|1|51|C|2716
6HCJ|1|51|G|2717
6HCJ|1|51|U|2718
6HCJ|1|51|C|2719

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain R3
eL19
Chain U3
eL22
Chain g3
eL34
Chain k3
eL38

Coloring options:

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