J4_6HCJ_009
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCGACUGUUUAAUUAAAACAAAGCA*UGUGAUUUCUGCCCAGUGCUCUG*CGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUGGAUGAACGAG
- Length
- 122 nucleotides
- Bulged bases
- 6HCJ|1|51|A|3642, 6HCJ|1|51|A|3643, 6HCJ|1|51|U|3644, 6HCJ|1|51|A|3760, 6HCJ|1|51|C|3761, 6HCJ|1|51|C|3791, 6HCJ|1|51|C|3810, 6HCJ|1|51|U|3818, 6HCJ|1|51|A|3828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|3632
6HCJ|1|51|C|3633
6HCJ|1|51|G|3634
6HCJ|1|51|A|3635
6HCJ|1|51|C|3636
6HCJ|1|51|U|3637
6HCJ|1|51|G|3638
6HCJ|1|51|U|3639
6HCJ|1|51|U|3640
6HCJ|1|51|U|3641
6HCJ|1|51|A|3642
6HCJ|1|51|A|3643
6HCJ|1|51|U|3644
6HCJ|1|51|U|3645
6HCJ|1|51|A|3646
6HCJ|1|51|A|3647
6HCJ|1|51|A|3648
6HCJ|1|51|A|3649
6HCJ|1|51|C|3650
6HCJ|1|51|A|3651
6HCJ|1|51|A|3652
6HCJ|1|51|A|3653
6HCJ|1|51|G|3654
6HCJ|1|51|C|3655
6HCJ|1|51|A|3656
*
6HCJ|1|51|U|3688
6HCJ|1|51|G|3689
6HCJ|1|51|U|3690
6HCJ|1|51|G|3691
6HCJ|1|51|A|3692
6HCJ|1|51|U|3693
6HCJ|1|51|U|3694
6HCJ|1|51|U|3695
6HCJ|1|51|C|3696
6HCJ|1|51|U|3697
6HCJ|1|51|G|3698
6HCJ|1|51|C|3699
6HCJ|1|51|C|3700
6HCJ|1|51|C|3701
6HCJ|1|51|A|3702
6HCJ|1|51|G|3703
6HCJ|1|51|U|3704
6HCJ|1|51|G|3705
6HCJ|1|51|C|3706
6HCJ|1|51|U|3707
6HCJ|1|51|C|3708
6HCJ|1|51|U|3709
6HCJ|1|51|G|3710
*
6HCJ|1|51|C|3741
6HCJ|1|51|G|3742
6HCJ|1|51|G|3743
6HCJ|1|51|G|3744
6HCJ|1|51|U|3745
6HCJ|1|51|A|3746
6HCJ|1|51|A|3747
6HCJ|1|51|A|3748
6HCJ|1|51|C|3749
6HCJ|1|51|G|3750
6HCJ|1|51|G|3751
6HCJ|1|51|C|3752
6HCJ|1|51|G|3753
6HCJ|1|51|G|3754
6HCJ|1|51|G|3755
6HCJ|1|51|A|3756
6HCJ|1|51|G|3757
6HCJ|1|51|U|3758
6HCJ|1|51|A|3759
6HCJ|1|51|A|3760
6HCJ|1|51|C|3761
6HCJ|1|51|U|3762
6HCJ|1|51|A|3763
6HCJ|1|51|U|3764
6HCJ|1|51|G|3765
6HCJ|1|51|A|3766
6HCJ|1|51|C|3767
6HCJ|1|51|U|3768
6HCJ|1|51|C|3769
6HCJ|1|51|U|3770
6HCJ|1|51|C|3771
6HCJ|1|51|U|3772
6HCJ|1|51|U|3773
6HCJ|1|51|A|3774
6HCJ|1|51|A|3775
6HCJ|1|51|G|3776
6HCJ|1|51|G|3777
6HCJ|1|51|U|3778
6HCJ|1|51|A|3779
6HCJ|1|51|G|3780
6HCJ|1|51|C|3781
6HCJ|1|51|C|3782
6HCJ|1|51|A|3783
6HCJ|1|51|A|3784
6HCJ|1|51|A|3785
6HCJ|1|51|U|3786
6HCJ|1|51|G|3787
6HCJ|1|51|C|3788
6HCJ|1|51|C|3789
6HCJ|1|51|U|3790
6HCJ|1|51|C|3791
6HCJ|1|51|G|3792
*
6HCJ|1|51|C|3808
6HCJ|1|51|G|3809
6HCJ|1|51|C|3810
6HCJ|1|51|G|3811
6HCJ|1|51|C|3812
6HCJ|1|51|A|3813
6HCJ|1|51|U|3814
6HCJ|1|51|G|3815
6HCJ|1|51|A|3816
6HCJ|1|51|A|3817
6HCJ|1|51|U|3818
6HCJ|1|51|G|3819
6HCJ|1|51|G|3820
6HCJ|1|51|A|3821
6HCJ|1|51|U|3822
6HCJ|1|51|G|3823
6HCJ|1|51|A|3824
6HCJ|1|51|A|3825
6HCJ|1|51|C|3826
6HCJ|1|51|G|3827
6HCJ|1|51|A|3828
6HCJ|1|51|G|3829
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 33
- Transfer RNA; tRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain j3
- Ribosomal protein L37
- Chain n3
- eL41
- Chain p3
- eL43
- Chain q3
- Transfer RNA; tRNA
Coloring options: