J4_6HCJ_011

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAG*CAGG*CCGUGUCC*GUCC

Length

21 nucleotides

Bulged bases

6HCJ|1|q3|U|8, 6HCJ|1|q3|U|47, 6HCJ|1|q3|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|q3|G|6
6HCJ|1|q3|A|7
6HCJ|1|q3|U|8
6HCJ|1|q3|A|9
6HCJ|1|q3|G|10
*
6HCJ|1|q3|C|25
6HCJ|1|q3|A|26
6HCJ|1|q3|G|27
6HCJ|1|q3|G|28
*
6HCJ|1|q3|C|42
6HCJ|1|q3|C|43
6HCJ|1|q3|G|44
6HCJ|1|q3|U|45
6HCJ|1|q3|G|46
6HCJ|1|q3|U|47
6HCJ|1|q3|C|48
6HCJ|1|q3|C|49
*
6HCJ|1|q3|G|65
6HCJ|1|q3|U|66
6HCJ|1|q3|C|67
6HCJ|1|q3|C|68

Current chains

Chain q3

A/P RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain I3

60S ribosomal protein L10

Chain Q2

uS19