J4_6HCJ_013
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCGCGAG*CGCAAUGAAGGUGAAG*CGAGGUGGGAUCCCGAGGCCUUCCAGUCCGCCGAGGGCGCACCACCGGCCCGUC*GUGGAGCACGAGCGCAC
- Length
- 96 nucleotides
- Bulged bases
- 6HCJ|1|51|A|1497, 6HCJ|1|51|C|1501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|G|1347
6HCJ|1|51|U|1348
6HCJ|1|51|G|1349
6HCJ|1|51|C|1350
6HCJ|1|51|G|1351
6HCJ|1|51|C|1352
6HCJ|1|51|G|1353
6HCJ|1|51|A|1354
6HCJ|1|51|G|1355
*
6HCJ|1|51|C|1384
6HCJ|1|51|G|1385
6HCJ|1|51|C|1386
6HCJ|1|51|A|1387
6HCJ|1|51|A|1388
6HCJ|1|51|U|1389
6HCJ|1|51|G|1390
6HCJ|1|51|A|1391
6HCJ|1|51|A|1392
6HCJ|1|51|G|1393
6HCJ|1|51|G|1394
6HCJ|1|51|U|1395
6HCJ|1|51|G|1396
6HCJ|1|51|A|1397
6HCJ|1|51|A|1398
6HCJ|1|51|G|1399
*
6HCJ|1|51|C|1418
6HCJ|1|51|G|1419
6HCJ|1|51|A|1420
6HCJ|1|51|G|1421
6HCJ|1|51|G|1422
6HCJ|1|51|U|1423
6HCJ|1|51|G|1424
6HCJ|1|51|G|1425
6HCJ|1|51|G|1426
6HCJ|1|51|A|1427
6HCJ|1|51|U|1428
6HCJ|1|51|C|1429
6HCJ|1|51|C|1430
6HCJ|1|51|C|1431
6HCJ|1|51|G|1432
6HCJ|1|51|A|1433
6HCJ|1|51|G|1434
6HCJ|1|51|G|1435
6HCJ|1|51|C|1436
6HCJ|1|51|C|1437
6HCJ|1|51|U|1438
6HCJ|1|51|U|1440
6HCJ|1|51|C|1441
6HCJ|1|51|C|1442
6HCJ|1|51|A|1443
6HCJ|1|51|G|1444
6HCJ|1|51|U|1445
6HCJ|1|51|C|1446
6HCJ|1|51|C|1447
6HCJ|1|51|G|1448
6HCJ|1|51|C|1449
6HCJ|1|51|C|1450
6HCJ|1|51|G|1451
6HCJ|1|51|A|1452
6HCJ|1|51|G|1453
6HCJ|1|51|G|1454
6HCJ|1|51|G|1455
6HCJ|1|51|C|1456
6HCJ|1|51|G|1457
6HCJ|1|51|C|1458
6HCJ|1|51|A|1459
6HCJ|1|51|C|1460
6HCJ|1|51|C|1461
6HCJ|1|51|A|1462
6HCJ|1|51|C|1463
6HCJ|1|51|C|1464
6HCJ|1|51|G|1465
6HCJ|1|51|G|1466
6HCJ|1|51|C|1467
6HCJ|1|51|C|1468
6HCJ|1|51|C|1469
6HCJ|1|51|G|1470
6HCJ|1|51|U|1471
6HCJ|1|51|C|1472
*
6HCJ|1|51|G|1493
6HCJ|1|51|U|1494
6HCJ|1|51|G|1495
6HCJ|1|51|G|1496
6HCJ|1|51|A|1497
6HCJ|1|51|G|1498
6HCJ|1|51|C|1499
6HCJ|1|51|A|1500
6HCJ|1|51|C|1501
6HCJ|1|51|G|1502
6HCJ|1|51|A|1503
6HCJ|1|51|G|1504
6HCJ|1|51|C|1505
6HCJ|1|51|G|1506
6HCJ|1|51|C|1507
6HCJ|1|51|A|1508
6HCJ|1|51|C|1509
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain F3
- uL30
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain a3
- uL15
- Chain b3
- eL29
- Chain i3
- 60S ribosomal protein L36
Coloring options: