J4_6HCJ_016

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGAUG*CAGUG*CGACCGAUC*GGGAGAGGGUGUAAAUCUC

Length

40 nucleotides

Bulged bases

6HCJ|1|51|G|2574, 6HCJ|1|51|U|2763, 6HCJ|1|51|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2549
6HCJ|1|51|G|2550
6HCJ|1|51|A|2551
6HCJ|1|51|G|2552
6HCJ|1|51|A|2553
6HCJ|1|51|U|2554
6HCJ|1|51|G|2555
*
6HCJ|1|51|C|2572
6HCJ|1|51|A|2573
6HCJ|1|51|G|2574
6HCJ|1|51|U|2575
6HCJ|1|51|G|2576
*
6HCJ|1|51|C|2585
6HCJ|1|51|G|2586
6HCJ|1|51|A|2587
6HCJ|1|51|C|2588
6HCJ|1|51|C|2589
6HCJ|1|51|G|2590
6HCJ|1|51|A|2591
6HCJ|1|51|U|2592
6HCJ|1|51|C|2593
*
6HCJ|1|51|G|2752
6HCJ|1|51|G|2753
6HCJ|1|51|G|2754
6HCJ|1|51|A|2755
6HCJ|1|51|G|2756
6HCJ|1|51|A|2757
6HCJ|1|51|G|2758
6HCJ|1|51|G|2759
6HCJ|1|51|G|2760
6HCJ|1|51|U|2761
6HCJ|1|51|G|2762
6HCJ|1|51|U|2763
6HCJ|1|51|A|2764
6HCJ|1|51|A|2765
6HCJ|1|51|A|2766
6HCJ|1|51|U|2767
6HCJ|1|51|C|2768
6HCJ|1|51|U|2769
6HCJ|1|51|C|2770

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain Z3

60S ribosomal protein L27

Chain g3

eL34

Chain k3

eL38