J4_6HCJ_018

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAGCCGG*UG*UGGUGCGGACCAGG*CAC

Length

28 nucleotides

Bulged bases

6HCJ|1|51|G|3615, 6HCJ|1|51|G|3620, 6HCJ|1|51|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2855
6HCJ|1|51|C|2856
6HCJ|1|51|A|2857
6HCJ|1|51|A|2858
6HCJ|1|51|G|2859
6HCJ|1|51|C|2860
6HCJ|1|51|C|2861
6HCJ|1|51|G|2862
6HCJ|1|51|G|2863
*
6HCJ|1|51|U|2887
6HCJ|1|51|G|2888
*
6HCJ|1|51|U|3613
6HCJ|1|51|G|3614
6HCJ|1|51|G|3615
6HCJ|1|51|U|3616
6HCJ|1|51|G|3617
6HCJ|1|51|C|3618
6HCJ|1|51|G|3619
6HCJ|1|51|G|3620
6HCJ|1|51|A|3621
6HCJ|1|51|C|3622
6HCJ|1|51|C|3623
6HCJ|1|51|A|3624
6HCJ|1|51|G|3625
6HCJ|1|51|G|3626
*
6HCJ|1|51|C|3835
6HCJ|1|51|A|3836
6HCJ|1|51|C|3837

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain B3

uL3

Chain J2

eS8

Chain R3

eL19

Chain V3

Ribosomal protein L23