J4_6HCM_005

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGGUC*GGAGUC*GAAUC*GGCCG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|2441
6HCM|1|52|G|2442
6HCM|1|52|G|2443
6HCM|1|52|U|2444
6HCM|1|52|C|2445
*
6HCM|1|52|G|2515
6HCM|1|52|G|2516
6HCM|1|52|A|2517
6HCM|1|52|G|2518
6HCM|1|52|U|2519
6HCM|1|52|C|2520
*
6HCM|1|52|G|2535
6HCM|1|52|A|2536
6HCM|1|52|A|2537
6HCM|1|52|U|2538
6HCM|1|52|C|2539
*
6HCM|1|52|G|2777
6HCM|1|52|G|2778
6HCM|1|52|C|2779
6HCM|1|52|C|2780
6HCM|1|52|G|2781

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain X3

uL23

Chain g3

eL34

Chain k3

eL38

Chain l3

eL39