J4_6HCM_007

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCCCGGG*UGUGAAGG*CUUGGAAAG*UCCGGUGAG

Length

33 nucleotides

Bulged bases

6HCM|1|52|A|2696, 6HCM|1|52|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|2613
6HCM|1|52|C|2614
6HCM|1|52|C|2615
6HCM|1|52|C|2616
6HCM|1|52|G|2617
6HCM|1|52|G|2618
6HCM|1|52|G|2619
*
6HCM|1|52|U|2637
6HCM|1|52|G|2638
6HCM|1|52|U|2639
6HCM|1|52|G|2640
6HCM|1|52|A|2641
6HCM|1|52|A|2642
6HCM|1|52|G|2643
6HCM|1|52|G|2644
*
6HCM|1|52|C|2690
6HCM|1|52|U|2691
6HCM|1|52|U|2692
6HCM|1|52|G|2693
6HCM|1|52|G|2694
6HCM|1|52|A|2695
6HCM|1|52|A|2696
6HCM|1|52|A|2697
6HCM|1|52|G|2698
*
6HCM|1|52|U|2718
6HCM|1|52|C|2719
6HCM|1|52|C|2720
6HCM|1|52|G|2721
6HCM|1|52|G|2722
6HCM|1|52|U|2723
6HCM|1|52|G|2724
6HCM|1|52|A|2725
6HCM|1|52|G|2726

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain g3

eL34

Chain k3

eL38