J4_6HCM_008
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GUAAGGGAAGUCGGCAAGCCGGAUC*GAUUGGCUCUAAG*CUUAGAACUGGUGCGGACCAGG*CACUGUCCCUAC
- Length
- 72 nucleotides
- Bulged bases
- 6HCM|1|52|G|3615, 6HCM|1|52|G|3620, 6HCM|1|52|G|3625, 6HCM|1|52|U|3840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|G|2842
6HCM|1|52|U|2843
6HCM|1|52|A|2844
6HCM|1|52|A|2845
6HCM|1|52|G|2846
6HCM|1|52|G|2847
6HCM|1|52|G|2848
6HCM|1|52|A|2849
6HCM|1|52|A|2850
6HCM|1|52|G|2851
6HCM|1|52|U|2852
6HCM|1|52|C|2853
6HCM|1|52|G|2854
6HCM|1|52|G|2855
6HCM|1|52|C|2856
6HCM|1|52|A|2857
6HCM|1|52|A|2858
6HCM|1|52|G|2859
6HCM|1|52|C|2860
6HCM|1|52|C|2861
6HCM|1|52|G|2862
6HCM|1|52|G|2863
6HCM|1|52|A|2864
6HCM|1|52|U|2865
6HCM|1|52|C|2866
*
6HCM|1|52|G|2884
6HCM|1|52|A|2885
6HCM|1|52|U|2886
6HCM|1|52|U|2887
6HCM|1|52|G|2888
6HCM|1|52|G|2889
6HCM|1|52|C|2890
6HCM|1|52|U|2891
6HCM|1|52|C|2892
6HCM|1|52|U|2893
6HCM|1|52|A|2894
6HCM|1|52|A|2895
6HCM|1|52|G|2896
*
6HCM|1|52|C|3605
6HCM|1|52|U|3606
6HCM|1|52|U|3607
6HCM|1|52|A|3608
6HCM|1|52|G|3609
6HCM|1|52|A|3610
6HCM|1|52|A|3611
6HCM|1|52|C|3612
6HCM|1|52|U|3613
6HCM|1|52|G|3614
6HCM|1|52|G|3615
6HCM|1|52|U|3616
6HCM|1|52|G|3617
6HCM|1|52|C|3618
6HCM|1|52|G|3619
6HCM|1|52|G|3620
6HCM|1|52|A|3621
6HCM|1|52|C|3622
6HCM|1|52|C|3623
6HCM|1|52|A|3624
6HCM|1|52|G|3625
6HCM|1|52|G|3626
*
6HCM|1|52|C|3835
6HCM|1|52|A|3836
6HCM|1|52|C|3837
6HCM|1|52|U|3838
6HCM|1|52|G|3839
6HCM|1|52|U|3840
6HCM|1|52|C|3841
6HCM|1|52|C|3842
6HCM|1|52|C|3843
6HCM|1|52|U|3844
6HCM|1|52|A|3845
6HCM|1|52|C|3846
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain B3
- uL3
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
- Chain R3
- eL19
- Chain V3
- Ribosomal protein L23
- Chain W3
- eL24
Coloring options: