3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UCUGCCCAG*CGGCGGG*CUCUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUGG
Length
53 nucleotides
Bulged bases
6HCM|1|52|C|3701, 6HCM|1|52|A|3785, 6HCM|1|52|C|3791, 6HCM|1|52|C|3810, 6HCM|1|52|U|3818
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|U|3695
6HCM|1|52|C|3696
6HCM|1|52|U|3697
6HCM|1|52|G|3698
6HCM|1|52|C|3699
6HCM|1|52|C|3700
6HCM|1|52|C|3701
6HCM|1|52|A|3702
6HCM|1|52|G|3703
*
6HCM|1|52|C|3749
6HCM|1|52|G|3750
6HCM|1|52|G|3751
6HCM|1|52|C|3752
6HCM|1|52|G|3753
6HCM|1|52|G|3754
6HCM|1|52|G|3755
*
6HCM|1|52|C|3769
6HCM|1|52|U|3770
6HCM|1|52|C|3771
6HCM|1|52|U|3772
6HCM|1|52|U|3773
6HCM|1|52|A|3774
6HCM|1|52|A|3775
6HCM|1|52|G|3776
6HCM|1|52|G|3777
6HCM|1|52|U|3778
6HCM|1|52|A|3779
6HCM|1|52|G|3780
6HCM|1|52|C|3781
6HCM|1|52|C|3782
6HCM|1|52|A|3783
6HCM|1|52|A|3784
6HCM|1|52|A|3785
6HCM|1|52|U|3786
6HCM|1|52|G|3787
6HCM|1|52|C|3788
6HCM|1|52|C|3789
6HCM|1|52|U|3790
6HCM|1|52|C|3791
6HCM|1|52|G|3792
*
6HCM|1|52|C|3808
6HCM|1|52|G|3809
6HCM|1|52|C|3810
6HCM|1|52|G|3811
6HCM|1|52|C|3812
6HCM|1|52|A|3813
6HCM|1|52|U|3814
6HCM|1|52|G|3815
6HCM|1|52|A|3816
6HCM|1|52|A|3817
6HCM|1|52|U|3818
6HCM|1|52|G|3819
6HCM|1|52|G|3820

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 23
Transfer RNA; tRNA
Chain A1
Small subunit ribosomal RNA; SSU rRNA
Chain A3
Ribosomal protein L8
Chain j1
eRF1(AAQ)
Chain n3
eL41
Chain p3
eL43

Coloring options:

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