J4_6HCM_011
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UCUGCCCAG*CGGCGGG*CUCUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUGG
- Length
- 53 nucleotides
- Bulged bases
- 6HCM|1|52|C|3701, 6HCM|1|52|A|3785, 6HCM|1|52|C|3791, 6HCM|1|52|C|3810, 6HCM|1|52|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|U|3695
6HCM|1|52|C|3696
6HCM|1|52|U|3697
6HCM|1|52|G|3698
6HCM|1|52|C|3699
6HCM|1|52|C|3700
6HCM|1|52|C|3701
6HCM|1|52|A|3702
6HCM|1|52|G|3703
*
6HCM|1|52|C|3749
6HCM|1|52|G|3750
6HCM|1|52|G|3751
6HCM|1|52|C|3752
6HCM|1|52|G|3753
6HCM|1|52|G|3754
6HCM|1|52|G|3755
*
6HCM|1|52|C|3769
6HCM|1|52|U|3770
6HCM|1|52|C|3771
6HCM|1|52|U|3772
6HCM|1|52|U|3773
6HCM|1|52|A|3774
6HCM|1|52|A|3775
6HCM|1|52|G|3776
6HCM|1|52|G|3777
6HCM|1|52|U|3778
6HCM|1|52|A|3779
6HCM|1|52|G|3780
6HCM|1|52|C|3781
6HCM|1|52|C|3782
6HCM|1|52|A|3783
6HCM|1|52|A|3784
6HCM|1|52|A|3785
6HCM|1|52|U|3786
6HCM|1|52|G|3787
6HCM|1|52|C|3788
6HCM|1|52|C|3789
6HCM|1|52|U|3790
6HCM|1|52|C|3791
6HCM|1|52|G|3792
*
6HCM|1|52|C|3808
6HCM|1|52|G|3809
6HCM|1|52|C|3810
6HCM|1|52|G|3811
6HCM|1|52|C|3812
6HCM|1|52|A|3813
6HCM|1|52|U|3814
6HCM|1|52|G|3815
6HCM|1|52|A|3816
6HCM|1|52|A|3817
6HCM|1|52|U|3818
6HCM|1|52|G|3819
6HCM|1|52|G|3820
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain j1
- eRF1(AAQ)
- Chain n3
- eL41
- Chain p3
- eL43
Coloring options: