J4_6HCM_019

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAGAUG*CAGUG*CGACCGAUC*GGGAGAGGGUGUAAAUCUC

Length

40 nucleotides

Bulged bases

6HCM|1|52|U|2575, 6HCM|1|52|U|2761, 6HCM|1|52|U|2763, 6HCM|1|52|C|2768, 6HCM|1|52|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|2549
6HCM|1|52|G|2550
6HCM|1|52|A|2551
6HCM|1|52|G|2552
6HCM|1|52|A|2553
6HCM|1|52|U|2554
6HCM|1|52|G|2555
*
6HCM|1|52|C|2572
6HCM|1|52|A|2573
6HCM|1|52|G|2574
6HCM|1|52|U|2575
6HCM|1|52|G|2576
*
6HCM|1|52|C|2585
6HCM|1|52|G|2586
6HCM|1|52|A|2587
6HCM|1|52|C|2588
6HCM|1|52|C|2589
6HCM|1|52|G|2590
6HCM|1|52|A|2591
6HCM|1|52|U|2592
6HCM|1|52|C|2593
*
6HCM|1|52|G|2752
6HCM|1|52|G|2753
6HCM|1|52|G|2754
6HCM|1|52|A|2755
6HCM|1|52|G|2756
6HCM|1|52|A|2757
6HCM|1|52|G|2758
6HCM|1|52|G|2759
6HCM|1|52|G|2760
6HCM|1|52|U|2761
6HCM|1|52|G|2762
6HCM|1|52|U|2763
6HCM|1|52|A|2764
6HCM|1|52|A|2765
6HCM|1|52|A|2766
6HCM|1|52|U|2767
6HCM|1|52|C|2768
6HCM|1|52|U|2769
6HCM|1|52|C|2770

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain Z3

eL27

Chain g3

eL34