3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GACUG*CAAAGC*GUGAUU*AUGAAC
Length
23 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|G|3634
6HCM|1|52|A|3635
6HCM|1|52|C|3636
6HCM|1|52|U|3637
6HCM|1|52|G|3638
*
6HCM|1|52|C|3650
6HCM|1|52|A|3651
6HCM|1|52|A|3652
6HCM|1|52|A|3653
6HCM|1|52|G|3654
6HCM|1|52|C|3655
*
6HCM|1|52|G|3689
6HCM|1|52|U|3690
6HCM|1|52|G|3691
6HCM|1|52|A|3692
6HCM|1|52|U|3693
6HCM|1|52|U|3694
*
6HCM|1|52|A|3821
6HCM|1|52|U|3822
6HCM|1|52|G|3823
6HCM|1|52|A|3824
6HCM|1|52|A|3825
6HCM|1|52|C|3826

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain A1
Small subunit ribosomal RNA; SSU rRNA
Chain A3
Ribosomal protein L8
Chain n3
eL41
Chain p3
eL43

Coloring options:

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