J4_6HCM_022

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GACUG*CAAAGC*GUGAUU*AUGAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|3634
6HCM|1|52|A|3635
6HCM|1|52|C|3636
6HCM|1|52|U|3637
6HCM|1|52|G|3638
*
6HCM|1|52|C|3650
6HCM|1|52|A|3651
6HCM|1|52|A|3652
6HCM|1|52|A|3653
6HCM|1|52|G|3654
6HCM|1|52|C|3655
*
6HCM|1|52|G|3689
6HCM|1|52|U|3690
6HCM|1|52|G|3691
6HCM|1|52|A|3692
6HCM|1|52|U|3693
6HCM|1|52|U|3694
*
6HCM|1|52|A|3821
6HCM|1|52|U|3822
6HCM|1|52|G|3823
6HCM|1|52|A|3824
6HCM|1|52|A|3825
6HCM|1|52|C|3826

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A3

Ribosomal protein L8

Chain n3

eL41

Chain p3

eL43