J4_6HCM_024

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUAAGGC*GCUUG*CC*GGG

Length

17 nucleotides

Bulged bases

6HCM|1|52|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|4231
6HCM|1|52|U|4232
6HCM|1|52|A|4233
6HCM|1|52|A|4234
6HCM|1|52|G|4235
6HCM|1|52|G|4236
6HCM|1|52|C|4237
*
6HCM|1|52|G|4287
6HCM|1|52|C|4288
6HCM|1|52|U|4289
6HCM|1|52|U|4290
6HCM|1|52|G|4291
*
6HCM|1|52|C|4318
6HCM|1|52|C|4319
*
6HCM|1|52|G|4328
6HCM|1|52|G|4329
6HCM|1|52|G|4330

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain T3

eL21

Chain o3

eL42