J4_6HCQ_004

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAAAUAUUC*GAAGGC*GCAUGUUG*CAG

Length

26 nucleotides

Bulged bases

6HCQ|1|51|A|2366, 6HCQ|1|51|U|2369, 6HCQ|1|51|A|2370, 6HCQ|1|51|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|2365
6HCQ|1|51|A|2366
6HCQ|1|51|A|2367
6HCQ|1|51|A|2368
6HCQ|1|51|U|2369
6HCQ|1|51|A|2370
6HCQ|1|51|U|2371
6HCQ|1|51|U|2372
6HCQ|1|51|C|2373
*
6HCQ|1|51|G|2387
6HCQ|1|51|A|2388
6HCQ|1|51|A|2389
6HCQ|1|51|G|2390
6HCQ|1|51|G|2391
6HCQ|1|51|C|2392
*
6HCQ|1|51|G|2823
6HCQ|1|51|C|2824
6HCQ|1|51|A|2825
6HCQ|1|51|U|2826
6HCQ|1|51|G|2827
6HCQ|1|51|U|2828
6HCQ|1|51|U|2829
6HCQ|1|51|G|2830
*
6HCQ|1|51|C|3855
6HCQ|1|51|A|3856
6HCQ|1|51|G|3857

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31