J4_6HCQ_005

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAAGUGGAGAAG*CCAUAUC*GUCUCCAAGGU*GCCUCUG

Length

38 nucleotides

Bulged bases

6HCQ|1|51|A|2396, 6HCQ|1|51|U|2398, 6HCQ|1|51|U|2788, 6HCQ|1|51|A|2789, 6HCQ|1|51|U|2790

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|2393
6HCQ|1|51|G|2394
6HCQ|1|51|A|2395
6HCQ|1|51|A|2396
6HCQ|1|51|G|2397
6HCQ|1|51|U|2398
6HCQ|1|51|G|2399
6HCQ|1|51|G|2400
6HCQ|1|51|A|2401
6HCQ|1|51|G|2402
6HCQ|1|51|A|2403
6HCQ|1|51|A|2404
6HCQ|1|51|G|2405
*
6HCQ|1|51|C|2785
6HCQ|1|51|C|2786
6HCQ|1|51|A|2787
6HCQ|1|51|U|2788
6HCQ|1|51|A|2789
6HCQ|1|51|U|2790
6HCQ|1|51|C|2791
*
6HCQ|1|51|G|2800
6HCQ|1|51|U|2801
6HCQ|1|51|C|2802
6HCQ|1|51|U|2803
6HCQ|1|51|C|2804
6HCQ|1|51|C|2805
6HCQ|1|51|A|2806
6HCQ|1|51|A|2807
6HCQ|1|51|G|2808
6HCQ|1|51|G|2809
6HCQ|1|51|U|2810
*
6HCQ|1|51|G|2816
6HCQ|1|51|C|2817
6HCQ|1|51|C|2818
6HCQ|1|51|U|2819
6HCQ|1|51|C|2820
6HCQ|1|51|U|2821
6HCQ|1|51|G|2822

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain l3

eL39