J4_6HCQ_006

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGGAGAUG*CAGUG*CGACCGAUCC*GGGGAGAGGGUGUAAAUCUCG

Length

44 nucleotides

Bulged bases

6HCQ|1|51|G|2574, 6HCQ|1|51|U|2763, 6HCQ|1|51|U|2769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|2548
6HCQ|1|51|G|2549
6HCQ|1|51|G|2550
6HCQ|1|51|A|2551
6HCQ|1|51|G|2552
6HCQ|1|51|A|2553
6HCQ|1|51|U|2554
6HCQ|1|51|G|2555
*
6HCQ|1|51|C|2572
6HCQ|1|51|A|2573
6HCQ|1|51|G|2574
6HCQ|1|51|U|2575
6HCQ|1|51|G|2576
*
6HCQ|1|51|C|2585
6HCQ|1|51|G|2586
6HCQ|1|51|A|2587
6HCQ|1|51|C|2588
6HCQ|1|51|C|2589
6HCQ|1|51|G|2590
6HCQ|1|51|A|2591
6HCQ|1|51|U|2592
6HCQ|1|51|C|2593
6HCQ|1|51|C|2594
*
6HCQ|1|51|G|2751
6HCQ|1|51|G|2752
6HCQ|1|51|G|2753
6HCQ|1|51|G|2754
6HCQ|1|51|A|2755
6HCQ|1|51|G|2756
6HCQ|1|51|A|2757
6HCQ|1|51|G|2758
6HCQ|1|51|G|2759
6HCQ|1|51|G|2760
6HCQ|1|51|U|2761
6HCQ|1|51|G|2762
6HCQ|1|51|U|2763
6HCQ|1|51|A|2764
6HCQ|1|51|A|2765
6HCQ|1|51|A|2766
6HCQ|1|51|U|2767
6HCQ|1|51|C|2768
6HCQ|1|51|U|2769
6HCQ|1|51|C|2770
6HCQ|1|51|G|2771

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain Z3

60S ribosomal protein L27

Chain g3

eL34

Chain k3

eL38