J4_6HCQ_008

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCAAGCCGG*UGG*CUGGUGCGGACCAGG*CAC

Length

30 nucleotides

Bulged bases

6HCQ|1|51|G|3615, 6HCQ|1|51|G|3620, 6HCQ|1|51|G|3625

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|2855
6HCQ|1|51|C|2856
6HCQ|1|51|A|2857
6HCQ|1|51|A|2858
6HCQ|1|51|G|2859
6HCQ|1|51|C|2860
6HCQ|1|51|C|2861
6HCQ|1|51|G|2862
6HCQ|1|51|G|2863
*
6HCQ|1|51|U|2887
6HCQ|1|51|G|2888
6HCQ|1|51|G|2889
*
6HCQ|1|51|C|3612
6HCQ|1|51|U|3613
6HCQ|1|51|G|3614
6HCQ|1|51|G|3615
6HCQ|1|51|U|3616
6HCQ|1|51|G|3617
6HCQ|1|51|C|3618
6HCQ|1|51|G|3619
6HCQ|1|51|G|3620
6HCQ|1|51|A|3621
6HCQ|1|51|C|3622
6HCQ|1|51|C|3623
6HCQ|1|51|A|3624
6HCQ|1|51|G|3625
6HCQ|1|51|G|3626
*
6HCQ|1|51|C|3835
6HCQ|1|51|A|3836
6HCQ|1|51|C|3837

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain B3

uL3

Chain J2

eS8

Chain R3

eL19

Chain V3

Ribosomal protein L23