J4_6HCQ_009
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CCGACUGUUUAAUUAAAACAAAGCA*UGUGAUUUCUGCCCAGUGCUCUG*CGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUGGAUGAACGAG
- Length
- 122 nucleotides
- Bulged bases
- 6HCQ|1|51|A|3642, 6HCQ|1|51|A|3643, 6HCQ|1|51|U|3644, 6HCQ|1|51|A|3760, 6HCQ|1|51|C|3761, 6HCQ|1|51|C|3791, 6HCQ|1|51|C|3810, 6HCQ|1|51|U|3818, 6HCQ|1|51|A|3828
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|51|C|3632
6HCQ|1|51|C|3633
6HCQ|1|51|G|3634
6HCQ|1|51|A|3635
6HCQ|1|51|C|3636
6HCQ|1|51|U|3637
6HCQ|1|51|G|3638
6HCQ|1|51|U|3639
6HCQ|1|51|U|3640
6HCQ|1|51|U|3641
6HCQ|1|51|A|3642
6HCQ|1|51|A|3643
6HCQ|1|51|U|3644
6HCQ|1|51|U|3645
6HCQ|1|51|A|3646
6HCQ|1|51|A|3647
6HCQ|1|51|A|3648
6HCQ|1|51|A|3649
6HCQ|1|51|C|3650
6HCQ|1|51|A|3651
6HCQ|1|51|A|3652
6HCQ|1|51|A|3653
6HCQ|1|51|G|3654
6HCQ|1|51|C|3655
6HCQ|1|51|A|3656
*
6HCQ|1|51|U|3688
6HCQ|1|51|G|3689
6HCQ|1|51|U|3690
6HCQ|1|51|G|3691
6HCQ|1|51|A|3692
6HCQ|1|51|U|3693
6HCQ|1|51|U|3694
6HCQ|1|51|U|3695
6HCQ|1|51|C|3696
6HCQ|1|51|U|3697
6HCQ|1|51|G|3698
6HCQ|1|51|C|3699
6HCQ|1|51|C|3700
6HCQ|1|51|C|3701
6HCQ|1|51|A|3702
6HCQ|1|51|G|3703
6HCQ|1|51|U|3704
6HCQ|1|51|G|3705
6HCQ|1|51|C|3706
6HCQ|1|51|U|3707
6HCQ|1|51|C|3708
6HCQ|1|51|U|3709
6HCQ|1|51|G|3710
*
6HCQ|1|51|C|3741
6HCQ|1|51|G|3742
6HCQ|1|51|G|3743
6HCQ|1|51|G|3744
6HCQ|1|51|U|3745
6HCQ|1|51|A|3746
6HCQ|1|51|A|3747
6HCQ|1|51|A|3748
6HCQ|1|51|C|3749
6HCQ|1|51|G|3750
6HCQ|1|51|G|3751
6HCQ|1|51|C|3752
6HCQ|1|51|G|3753
6HCQ|1|51|G|3754
6HCQ|1|51|G|3755
6HCQ|1|51|A|3756
6HCQ|1|51|G|3757
6HCQ|1|51|U|3758
6HCQ|1|51|A|3759
6HCQ|1|51|A|3760
6HCQ|1|51|C|3761
6HCQ|1|51|U|3762
6HCQ|1|51|A|3763
6HCQ|1|51|U|3764
6HCQ|1|51|G|3765
6HCQ|1|51|A|3766
6HCQ|1|51|C|3767
6HCQ|1|51|U|3768
6HCQ|1|51|C|3769
6HCQ|1|51|U|3770
6HCQ|1|51|C|3771
6HCQ|1|51|U|3772
6HCQ|1|51|U|3773
6HCQ|1|51|A|3774
6HCQ|1|51|A|3775
6HCQ|1|51|G|3776
6HCQ|1|51|G|3777
6HCQ|1|51|U|3778
6HCQ|1|51|A|3779
6HCQ|1|51|G|3780
6HCQ|1|51|C|3781
6HCQ|1|51|C|3782
6HCQ|1|51|A|3783
6HCQ|1|51|A|3784
6HCQ|1|51|A|3785
6HCQ|1|51|U|3786
6HCQ|1|51|G|3787
6HCQ|1|51|C|3788
6HCQ|1|51|C|3789
6HCQ|1|51|U|3790
6HCQ|1|51|C|3791
6HCQ|1|51|G|3792
*
6HCQ|1|51|C|3808
6HCQ|1|51|G|3809
6HCQ|1|51|C|3810
6HCQ|1|51|G|3811
6HCQ|1|51|C|3812
6HCQ|1|51|A|3813
6HCQ|1|51|U|3814
6HCQ|1|51|G|3815
6HCQ|1|51|A|3816
6HCQ|1|51|A|3817
6HCQ|1|51|U|3818
6HCQ|1|51|G|3819
6HCQ|1|51|G|3820
6HCQ|1|51|A|3821
6HCQ|1|51|U|3822
6HCQ|1|51|G|3823
6HCQ|1|51|A|3824
6HCQ|1|51|A|3825
6HCQ|1|51|C|3826
6HCQ|1|51|G|3827
6HCQ|1|51|A|3828
6HCQ|1|51|G|3829
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 33
- Transfer RNA; tRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain j3
- Ribosomal protein L37
- Chain n3
- eL41
- Chain p3
- eL43
- Chain q3
- Transfer RNA; tRNA
Coloring options: