J4_6HCQ_012
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CCAGCG*CGUACG*CCGGAGUCG*CAAAGCGGGUGGUAAACUCCAUCUAAG
- Length
- 48 nucleotides
- Bulged bases
- 6HCQ|1|51|C|159, 6HCQ|1|51|A|279, 6HCQ|1|51|C|309, 6HCQ|1|51|G|315, 6HCQ|1|51|U|316
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCQ|1|51|C|111
6HCQ|1|51|C|112
6HCQ|1|51|A|113
6HCQ|1|51|G|114
6HCQ|1|51|C|115
6HCQ|1|51|G|116
*
6HCQ|1|51|C|155
6HCQ|1|51|G|156
6HCQ|1|51|U|157
6HCQ|1|51|A|158
6HCQ|1|51|C|159
6HCQ|1|51|G|160
*
6HCQ|1|51|C|275
6HCQ|1|51|C|276
6HCQ|1|51|G|277
6HCQ|1|51|G|278
6HCQ|1|51|A|279
6HCQ|1|51|G|280
6HCQ|1|51|U|281
6HCQ|1|51|C|282
6HCQ|1|51|G|283
*
6HCQ|1|51|C|304
6HCQ|1|51|A|305
6HCQ|1|51|A|306
6HCQ|1|51|A|307
6HCQ|1|51|G|308
6HCQ|1|51|C|309
6HCQ|1|51|G|310
6HCQ|1|51|G|311
6HCQ|1|51|G|312
6HCQ|1|51|U|313
6HCQ|1|51|G|314
6HCQ|1|51|G|315
6HCQ|1|51|U|316
6HCQ|1|51|A|317
6HCQ|1|51|A|318
6HCQ|1|51|A|319
6HCQ|1|51|C|320
6HCQ|1|51|U|321
6HCQ|1|51|C|322
6HCQ|1|51|C|323
6HCQ|1|51|A|324
6HCQ|1|51|U|325
6HCQ|1|51|C|326
6HCQ|1|51|U|327
6HCQ|1|51|A|328
6HCQ|1|51|A|329
6HCQ|1|51|G|330
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain G3
- eL8
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain h3
- uL29
- Chain i3
- 60S ribosomal protein L36
- Chain o3
- eL42
Coloring options: