J4_6HCQ_017

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGG*UUGUGAAGGGCAG*CGUGCCUUGGAAAGCGUC*GGCGUC

Length

40 nucleotides

Bulged bases

6HCQ|1|51|U|2687, 6HCQ|1|51|A|2696

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|G|2618
6HCQ|1|51|G|2619
6HCQ|1|51|G|2620
*
6HCQ|1|51|U|2636
6HCQ|1|51|U|2637
6HCQ|1|51|G|2638
6HCQ|1|51|U|2639
6HCQ|1|51|G|2640
6HCQ|1|51|A|2641
6HCQ|1|51|A|2642
6HCQ|1|51|G|2643
6HCQ|1|51|G|2644
6HCQ|1|51|G|2645
6HCQ|1|51|C|2646
6HCQ|1|51|A|2647
6HCQ|1|51|G|2648
*
6HCQ|1|51|C|2685
6HCQ|1|51|G|2686
6HCQ|1|51|U|2687
6HCQ|1|51|G|2688
6HCQ|1|51|C|2689
6HCQ|1|51|C|2690
6HCQ|1|51|U|2691
6HCQ|1|51|U|2692
6HCQ|1|51|G|2693
6HCQ|1|51|G|2694
6HCQ|1|51|A|2695
6HCQ|1|51|A|2696
6HCQ|1|51|A|2697
6HCQ|1|51|G|2698
6HCQ|1|51|C|2699
6HCQ|1|51|G|2700
6HCQ|1|51|U|2701
6HCQ|1|51|C|2702
*
6HCQ|1|51|G|2714
6HCQ|1|51|G|2715
6HCQ|1|51|C|2716
6HCQ|1|51|G|2717
6HCQ|1|51|U|2718
6HCQ|1|51|C|2719

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain g3

eL34

Chain k3

eL38