J4_6HD7_012

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAUAGC*GUGAUU*AUUAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HD7|1|1|G|2130
6HD7|1|1|A|2131
6HD7|1|1|C|2132
6HD7|1|1|U|2133
6HD7|1|1|G|2134
*
6HD7|1|1|C|2146
6HD7|1|1|A|2147
6HD7|1|1|U|2148
6HD7|1|1|A|2149
6HD7|1|1|G|2150
6HD7|1|1|C|2151
*
6HD7|1|1|G|2185
6HD7|1|1|U|2186
6HD7|1|1|G|2187
6HD7|1|1|A|2188
6HD7|1|1|U|2189
6HD7|1|1|U|2190
*
6HD7|1|1|A|2317
6HD7|1|1|U|2318
6HD7|1|1|U|2319
6HD7|1|1|A|2320
6HD7|1|1|A|2321
6HD7|1|1|C|2322

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L41-A