J4_6HHQ_006
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HHQ_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.057
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HHQ|1|1|G|2130
6HHQ|1|1|A|2131
6HHQ|1|1|C|2132
6HHQ|1|1|U|2133
6HHQ|1|1|G|2134
*
6HHQ|1|1|C|2146
6HHQ|1|1|A|2147
6HHQ|1|1|U|2148
6HHQ|1|1|A|2149
6HHQ|1|1|G|2150
*
6HHQ|1|1|U|2186
6HHQ|1|1|G|2187
6HHQ|1|1|A|2188
6HHQ|1|1|U|2189
6HHQ|1|1|U|2190
*
6HHQ|1|1|A|2317
6HHQ|1|1|U|2318
6HHQ|1|1|U|2319
6HHQ|1|1|A|2320
6HHQ|1|1|A|2321
6HHQ|1|1|C|2322
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: