J4_6HMA_007

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAG*CGAAAG

Length

23 nucleotides

Bulged bases

6HMA|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|C|1860
6HMA|1|A|U|1861
6HMA|1|A|G|1862
6HMA|1|A|C|1863
*
6HMA|1|A|G|1931
6HMA|1|A|C|1932
6HMA|1|A|G|1933
*
6HMA|1|A|C|1951
6HMA|1|A|C|1952
6HMA|1|A|U|1953
6HMA|1|A|A|1954
6HMA|1|A|A|1955
6HMA|1|A|G|1956
6HMA|1|A|G|1957
6HMA|1|A|U|1958
6HMA|1|A|A|1959
6HMA|1|A|G|1960
*
6HMA|1|A|C|1994
6HMA|1|A|G|1995
6HMA|1|A|A|1996
6HMA|1|A|A|1997
6HMA|1|A|A|1998
6HMA|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2